Please reference our Bioinformatics paper, if you are using PROBER for research :

Navin N, Grubor V, Hicks J, Leibu E, Thomas E, Troge J, Riggs M, Lundin P, Maner S, Sebat J, Zetterberg A, Wigler M. PROBER : oligonucleotide FISH probe design software. Bioinformatics. 2006 Jun 1. Epub
PMID: 16740623


RELATED PUBLICATIONS

Jobanputra V, Sebat J, Troge J, Chung W, Anyane-Yeboa K, Wigler M, Warburton D. Application of ROMA (representational oligonucleotide microarray analysis) to patients with cytogenetic rearrangements. Genet Med. 2005 Feb;7(2):111-8. PMID: 15714078

Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Maner S, Massa H, Walker M, Chi M, Navin N, Lucito R, Healy J, Hicks J, Ye K, Reiner A, Gilliam TC, Trask B, Patterson N, Zetterberg A, Wigler M. Large-scale copy number polymorphism in the human genome. Science. 2004 Jul 23;305(5683):525-8.PMID: 15273396

Lucito R, Healy J, Alexander J, Reiner A, Esposito D, Chi M, Rodgers L, Brady A, Sebat J, Troge J, West JA, Rostan S, Nguyen KC, Powers S, Ye KQ, Olshen A, Venkatraman E, Norton L, Wigler M. Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation. Genome Res. 2003 Oct;13(10):2291-305. PMID: 12975311

Thomas EE, Srebro N, Sebat J, Navin N, Healy J, Mishra B, Wigler M. Distribution of short paired duplications in mammalian genomes. Proc Natl Acad Sci U S A. 2004 Jul 13;101(28):10349-54. Epub 2004 Jul 6. PMID: 15240876

Healy J, Thomas EE, Schwartz JT, Wigler M. Annotating large genomes with exact word matches.
Genome Res. 2003 Oct;13(10):2306-15. PMID: 12975312